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microarray gene expression analysis  (Thermo Fisher)


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    Thermo Fisher microarray gene expression analysis
    Microarray Gene Expression Analysis, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/gene+expression+microarray+analysis/microarray+gene+expression+analysis/pm38843995-127-1-8
    Average 90 stars, based on 1 article reviews
    microarray gene expression analysis - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Gene Expression:

    Article Title: Metabolic profiling of ob/ob mouse fatty liver using HR-MAS 1H-NMR combined with gene expression analysis reveals alterations in betaine metabolism and the transsulfuration pathway
    Article Snippet: Metabolic perturbations resulting from excessive hepatic fat accumulation are poorly understood.. Thus, in this study, leptin-deficient ob/ob mice, a mouse model of fatty liver disease, were used to investigate metabolic alterations in more detail.. Metabolites were quantified in intact liver tissues of ob/ob (n = 8) and control (n = 8) mice using highresolution magic angle spinning (HR-MAS) H-NMR.

    Article Title: Tangshen formula attenuates diabetic renal injuries by upregulating autophagy via inhibition of PLZF expression
    Article Snippet: .. To identify the pharmacologic target of TSF in renal injuries in T2DM, mRNA profiling of the kidneys of db/m (n = 3), db/db (n = 3), and db/db mice subjected to TSF treatment (n = 3) was performed using Affymetrix gene expression microarray analysis. ..

    Article Title: Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice
    Article Snippet: .. Therefore, to investigate how GRN impinges upon fibroblast function beyond induction of αSMA expression, we treated triplicate samples of hMF-2 human mammary fibroblasts with either human rGRN (1 μg/ml) or PBS control every 24 hours for 6 days, prepared mRNA, and performed gene expression microarray analysis (Affymetrix U133 Plus). ..

    Article Title: Extracellular vesicles of stromal origin target and support hematopoietic stem and progenitor cells
    Article Snippet: .. RNAs from freshly sorted LSK cells or from LSK cells cultured with or without AFT EVs for 18 h were used to carry out gene expression microarray analysis (Affymetrix arrays, mouse gene 2.0 ST). ..

    Article Title: Effects of Colostrinin on gene expression-transcriptomal network analysis.
    Article Snippet: Article history: ColostrininTM (CLN) is a unif Received 15 May 2008 Received in revised form 23 October 2008 Accepted 27 October 2008

    Article Title: Invasive markers identified by gene expression profiling in pancreatic cancer.
    Article Snippet: Background: Molecular profiling has proven utility as a diagnostic and predictive tool in clinical oncology.. However, a clinically relevant gene expression profile in pancreatic cancer remains elusive.. Methods: Primary and metastatic pancreatic cancer cell lines (BxPC-3 and AsPC-1), were stimulated with phorbol-12-myristate 13-acetate (PMA), a known inducer of cell invasion.

    Article Title: Regulation of apoptosis in fibroblast-like synoviocytes by the hypoxia-induced Bcl-2 family member Bcl-2/adenovirus E1B 19-kd protein-interacting protein 3.
    Article Snippet: Objective.. Rheumatoid arthritis (RA) synovial hyperplasia is related in part to a resistance to apoptosis exhibited by fibroblast-like synoviocytes (FLS).. Since hypoxia is a regulator of apoptosis, and since RA synovium is hypoxic, we conducted this study to examine the effects of hypoxia on the Bcl-2 pathway and the role this may play in regulating apoptosis in FLS.

    Article Title: IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα 2 through IRF9
    Article Snippet: .. K Verstraeten performed the Affymetrix gene expression microarray analysis. ..

    Microarray:

    Article Title: Metabolic profiling of ob/ob mouse fatty liver using HR-MAS 1H-NMR combined with gene expression analysis reveals alterations in betaine metabolism and the transsulfuration pathway
    Article Snippet: Metabolic perturbations resulting from excessive hepatic fat accumulation are poorly understood.. Thus, in this study, leptin-deficient ob/ob mice, a mouse model of fatty liver disease, were used to investigate metabolic alterations in more detail.. Metabolites were quantified in intact liver tissues of ob/ob (n = 8) and control (n = 8) mice using highresolution magic angle spinning (HR-MAS) H-NMR.

    Article Title: Tangshen formula attenuates diabetic renal injuries by upregulating autophagy via inhibition of PLZF expression
    Article Snippet: .. To identify the pharmacologic target of TSF in renal injuries in T2DM, mRNA profiling of the kidneys of db/m (n = 3), db/db (n = 3), and db/db mice subjected to TSF treatment (n = 3) was performed using Affymetrix gene expression microarray analysis. ..

    Article Title: Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice
    Article Snippet: .. Therefore, to investigate how GRN impinges upon fibroblast function beyond induction of αSMA expression, we treated triplicate samples of hMF-2 human mammary fibroblasts with either human rGRN (1 μg/ml) or PBS control every 24 hours for 6 days, prepared mRNA, and performed gene expression microarray analysis (Affymetrix U133 Plus). ..

    Article Title: Extracellular vesicles of stromal origin target and support hematopoietic stem and progenitor cells
    Article Snippet: .. RNAs from freshly sorted LSK cells or from LSK cells cultured with or without AFT EVs for 18 h were used to carry out gene expression microarray analysis (Affymetrix arrays, mouse gene 2.0 ST). ..

    Article Title: Effects of Colostrinin on gene expression-transcriptomal network analysis.
    Article Snippet: Article history: ColostrininTM (CLN) is a unif Received 15 May 2008 Received in revised form 23 October 2008 Accepted 27 October 2008

    Article Title: Invasive markers identified by gene expression profiling in pancreatic cancer.
    Article Snippet: Background: Molecular profiling has proven utility as a diagnostic and predictive tool in clinical oncology.. However, a clinically relevant gene expression profile in pancreatic cancer remains elusive.. Methods: Primary and metastatic pancreatic cancer cell lines (BxPC-3 and AsPC-1), were stimulated with phorbol-12-myristate 13-acetate (PMA), a known inducer of cell invasion.

    Article Title: Regulation of apoptosis in fibroblast-like synoviocytes by the hypoxia-induced Bcl-2 family member Bcl-2/adenovirus E1B 19-kd protein-interacting protein 3.
    Article Snippet: Objective.. Rheumatoid arthritis (RA) synovial hyperplasia is related in part to a resistance to apoptosis exhibited by fibroblast-like synoviocytes (FLS).. Since hypoxia is a regulator of apoptosis, and since RA synovium is hypoxic, we conducted this study to examine the effects of hypoxia on the Bcl-2 pathway and the role this may play in regulating apoptosis in FLS.

    Article Title: IL6 sensitizes prostate cancer to the antiproliferative effect of IFNα 2 through IRF9
    Article Snippet: .. K Verstraeten performed the Affymetrix gene expression microarray analysis. ..

    Expressing:

    Article Title: Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice
    Article Snippet: .. Therefore, to investigate how GRN impinges upon fibroblast function beyond induction of αSMA expression, we treated triplicate samples of hMF-2 human mammary fibroblasts with either human rGRN (1 μg/ml) or PBS control every 24 hours for 6 days, prepared mRNA, and performed gene expression microarray analysis (Affymetrix U133 Plus). ..

    Article Title: Effects of Colostrinin on gene expression-transcriptomal network analysis.
    Article Snippet: Article history: ColostrininTM (CLN) is a unif Received 15 May 2008 Received in revised form 23 October 2008 Accepted 27 October 2008

    Control:

    Article Title: Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice
    Article Snippet: .. Therefore, to investigate how GRN impinges upon fibroblast function beyond induction of αSMA expression, we treated triplicate samples of hMF-2 human mammary fibroblasts with either human rGRN (1 μg/ml) or PBS control every 24 hours for 6 days, prepared mRNA, and performed gene expression microarray analysis (Affymetrix U133 Plus). ..

    Cell Culture:

    Article Title: Extracellular vesicles of stromal origin target and support hematopoietic stem and progenitor cells
    Article Snippet: .. RNAs from freshly sorted LSK cells or from LSK cells cultured with or without AFT EVs for 18 h were used to carry out gene expression microarray analysis (Affymetrix arrays, mouse gene 2.0 ST). ..

    Indirect Immunoperoxidase Assay:

    Article Title: Effects of Colostrinin on gene expression-transcriptomal network analysis.
    Article Snippet: Article history: ColostrininTM (CLN) is a unif Received 15 May 2008 Received in revised form 23 October 2008 Accepted 27 October 2008

    Software:

    Article Title: Effects of Colostrinin on gene expression-transcriptomal network analysis.
    Article Snippet: Article history: ColostrininTM (CLN) is a unif Received 15 May 2008 Received in revised form 23 October 2008 Accepted 27 October 2008



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    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by <t>microarray</t> analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.
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    Agilent technologies two-color microarray-based gene expression analysis microarrays
    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by <t>microarray.</t> There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.
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    Image Search Results


    NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Journal: Journal of Experimental Botany

    Article Title: NAC61 regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine

    doi: 10.1093/jxb/erad507

    Figure Lengend Snippet: NAC61 expression analysis. (A) NAC61 expression behavior in grapevine organs throughout development (bar plot) and compared in the heatmap (logarithmic value) with that of NAC60 and NAC33. The data were retrieved from the atlas transcriptomic dataset of cv. ‘Corvina’ ( Fasoli et al ., 2012 ). Each value represents the mean ±SD of three biological replicates. (B) Correlation between NAC61 expression level and sugar content in grape berries sampled from fruit set to maturity in cv. ‘Cabernet Sauvignon’ and cv. ‘Pinot noir’ ( Fasoli et al ., 2018 ). The black line represents the trend of the averaged values of the two varieties. The R 2 values shown correspond to the fitting of different polynomial regressions to each corresponding group of samples (orange for cv. ‘Cabernet Sauvignon’ samples, blue for cv. ‘Pinot noir’ samples, and black for the entire set of samples). (C) Correlation between NAC61 expression level and sugar content in grape berries sampled during post-harvest dehydration in six different varieties ( Zenoni et al ., 2016 ). (D) Correlation between NAC61 expression level and berry weight loss in cv. ‘Corvina’ berries sampled during traditional long and forced short post-harvest dehydration processes ( Zenoni et al ., 2020 ). Expression values were determined by microarray analysis and each value represents the mean ±SD from three biological replicates. (E) NAC61 GCNs based on berry, leaf, and tissue-independent (TI) datasets. Left, Venn diagram showing exclusive and shared genes based on the three datasets; right, three-dimensional plot of co-expressed genes in which NAC, WRKY, and ZIP family members already described as having involvement in berry ripening and/or stress responses are indicated.

    Article Snippet: The cDNA synthesis, labelling, hybridization, and washing steps were performed according to the Agilent Microarray-Based Gene Expression Analysis Guide ( https://www.agilent.com/cs/library/usermanuals/Public/G4140-90040_GeneExpression_OneColor_6.9.pdf ).

    Techniques: Expressing, Microarray

    Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Journal: Frontiers in Oncology

    Article Title: Oncopig bladder cancer cells recapitulate human bladder cancer treatment responses in vitro

    doi: 10.3389/fonc.2024.1323422

    Figure Lengend Snippet: Summary of apoptosis pathways in human and Oncopig cells. Summarized apoptotic pathways altered by gemcitabine treatment in Oncopig BCCL and 5637 cells evaluated by microarray. There were multiple possible cellular pathways involved in apoptosis induction, such as: TP53INP1/P53/BCL/BAX/CASPASE mitochondrial intrinsical pathway; TP53INP1/TP73 activation; FAS/RB1/GADD45B/CASPASE pathway and cell rounding up by RND1 and/or ZMYM6.

    Article Snippet: To obtain the gene transcription panel of treated and untreated human and Oncopig cells, the Two-Color Microarray-Based Gene Expression Analysis microarrays (Agilent Technologies Inc, Santa Clara, CA, USA) were used according to the manufacturer’s instructions.

    Techniques: Microarray, Activation Assay